PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g13830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 150aa    MW: 16795.5 Da    PI: 7.7564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g13830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-191667256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+G+r+++ +g+++AeIrdp+     +r++lg+f tae+Aa+a++aa+  ++g+
  Vang06g13830.1 16 RYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFETAEQAARAYDAAAFHFRGH 67
                    69*******.**********8542..4***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.47E-201575No hitNo description
PfamPF008474.6E-131667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-321676IPR001471AP2/ERF domain
PROSITE profilePS5103225.4351674IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-231675IPR016177DNA-binding domain
SMARTSM003801.7E-361680IPR001471AP2/ERF domain
PRINTSPR003671.1E-111728IPR001471AP2/ERF domain
PRINTSPR003671.1E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEGGRSSVSN GNVEARYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFETA EQAARAYDAA  60
AFHFRGHRAI LNFPNEYQSS NPNSSLPMPL TTLPPPSSSS SSSSSSYSSS YSSYSIESMQ  120
GDDTFELEYL DNKLLEELLQ MQDNRHLFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-271774663ATERF1
3gcc_A2e-271774663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238476.11e-75uncharacterized protein LOC100500462
RefseqXP_006593380.11e-75PREDICTED: uncharacterized protein LOC100500462 isoform X1
SwissprotQ9LTC53e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLC6T1T91e-75C6T1T9_SOYBN; Uncharacterized protein
STRINGGLYMA13G18400.14e-75(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-29ERF family protein